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rarres3l retinoic acid receptor responder 3-like [ Danio rerio (zebrafish) ]

Gene ID: 436896, updated on 9-Dec-2024

Summary

Official Symbol
rarres3lprovided by ZNC
Official Full Name
retinoic acid receptor responder 3-likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-368
See related
Ensembl:ENSDARG00000076563 AllianceGenome:ZFIN:ZDB-GENE-040718-368
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92249
Summary
Predicted to enable N-acyltransferase activity; phospholipase A1 activity; and phospholipase A2 activity. Predicted to be involved in N-acylphosphatidylethanolamine metabolic process. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to several human genes including PLAAT4 (phospholipase A and acyltransferase 4). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See rarres3l in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (45565911..45571764)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (46578619..46584472)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 5 Neighboring gene retinoic acid receptor responder 3 Neighboring gene SCY1-like, kinase-like 1 Neighboring gene zgc:194285 Neighboring gene si:ch211-276i12.9

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables N-acyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables phospholipase A1 activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables phospholipase A2 activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in N-acylphosphatidylethanolamine metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
retinoic acid receptor responder 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002623.1NP_001002623.1  retinoic acid receptor responder 3-like

    See identical proteins and their annotated locations for NP_001002623.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075961
    UniProtKB/TrEMBL
    A0A8M1N0T7, Q6DHK9
    Related
    ENSDARP00000008065.6, ENSDART00000025549.8
    Conserved Domains (1) summary
    pfam04970
    Location:21127
    LRAT; Lecithin retinol acyltransferase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    45565911..45571764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)