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ap3s2 adaptor related protein complex 3 subunit sigma 2 [ Danio rerio (zebrafish) ]

Gene ID: 436812, updated on 9-Dec-2024

Summary

Official Symbol
ap3s2provided by ZNC
Official Full Name
adaptor related protein complex 3 subunit sigma 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-274
See related
Ensembl:ENSDARG00000039882 AllianceGenome:ZFIN:ZDB-GENE-040718-274
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92795
Summary
Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within Golgi to vacuole transport and intracellular protein transport. Predicted to be located in cytoplasmic vesicle membrane. Predicted to be part of AP-3 adaptor complex. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human AP3S2 (adaptor related protein complex 3 subunit sigma 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See ap3s2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (10793501..10803532)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (10696705..10706736)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor-related protein 5 Neighboring gene wu:fa25f02 Neighboring gene alanyl (membrane) aminopeptidase b, tandem duplicate 1 Neighboring gene aminopeptidase N

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within Golgi to vacuole transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of AP-3 adaptor complex IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
AP-3 complex subunit sigma-2
Names
adaptor-related protein complex 3, sigma 2 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002539.1NP_001002539.1  AP-3 complex subunit sigma-2

    See identical proteins and their annotated locations for NP_001002539.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076269
    UniProtKB/TrEMBL
    A0A8M1N0U3, Q6DGS0
    Related
    ENSDARP00000058338.5, ENSDART00000058339.7
    Conserved Domains (1) summary
    cd14834
    Location:1146
    AP3_sigma; AP-3 complex subunit sigma

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    10793501..10803532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)