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n6amt1 N-6 adenine-specific DNA methyltransferase 1 [ Danio rerio (zebrafish) ]

Gene ID: 436775, updated on 9-Dec-2024

Summary

Official Symbol
n6amt1provided by ZNC
Official Full Name
N-6 adenine-specific DNA methyltransferase 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-206
See related
Ensembl:ENSDARG00000115421 AllianceGenome:ZFIN:ZDB-GENE-040718-206
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92834
Summary
Predicted to enable S-adenosylmethionine-dependent methyltransferase activity and protein methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be part of eRF1 methyltransferase complex. Orthologous to human N6AMT1 (N-6 adenine-specific DNA methyltransferase 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See n6amt1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (961607..970952)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (966428..975876)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 5 Neighboring gene uncharacterized LOC137495378 Neighboring gene uncharacterized LOC100332351 Neighboring gene phosphoribosylglycinamide formyltransferase

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables protein methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables site-specific DNA-methyltransferase (adenine-specific) activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of eRF1 methyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
methyltransferase N6AMT1
Names
N-6 adenine-specific DNA methyltransferase 1 (putative)
NP_001002502.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002502.1NP_001002502.1  methyltransferase N6AMT1

    See identical proteins and their annotated locations for NP_001002502.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076297
    UniProtKB/TrEMBL
    Q6DGP3
    Related
    ENSDARP00000157105.1, ENSDART00000184660.1
    Conserved Domains (2) summary
    COG2890
    Location:16213
    HemK; Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:17211
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    961607..970952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)