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CG1647 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 43401, updated on 4-Jan-2025

Summary

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Official Symbol
CG1647provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0039602
Locus tag
Dmel_CG1647
See related
AllianceGenome:FB:FBgn0039602
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG1647
Summary
Predicted to enable chromatin insulator sequence binding activity and transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in chromosome. Is expressed in dorsal pharyngeal muscle cell; embryonic/larval midgut; larval muscle system; and organism. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG1647 in Genome Data Viewer
Location:
98E5-98E5; 3-97 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (28820221..28824508)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (24645943..24650230)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pre-mRNA processing factor 39 Neighboring gene uncharacterized protein Neighboring gene WASp Neighboring gene APC-like Neighboring gene sponge Neighboring gene Innexin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Innexin 3, a new gene required for dorsal closure in Drosophila embryo. Giuliani F, et al. PLoS One, 2013. PMID 23894431, Free PMC Article
  2. Control of Cell Growth and Proliferation by the Tribbles Pseudokinase: Lessons from Drosophila. Dobens LL, et al. Cancers (Basel), 2021 Feb 20. PMID 33672471, Free PMC Article
  3. An RNA-interference screen in Drosophila to identify ZAD-containing C2H2 zinc finger genes that function in female germ cells. Shapiro-Kulnane L, et al. G3 (Bethesda), 2021 Jan 18. PMID 33561227, Free PMC Article
  4. ZAD-Domain Is Essential for Nuclear Localization of Insulator Proteins in Drosophila melanogaster. Zolotarev NA, et al. Acta Naturae, 2016 Jul-Sep. PMID 27795848, Free PMC Article
  5. Innovation of heterochromatin functions drives rapid evolution of essential ZAD-ZNF genes in Drosophila. Kasinathan B, et al. Elife, 2020 Nov 10. PMID 33169670, Free PMC Article

See all (28) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables chromatin insulator sequence binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transcription cis-regulatory region binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in chromosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG1647-PA
CG1647-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    28820221..28824508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_143379.3 → NP_651636.1  uncharacterized protein Dmel_CG1647, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651636.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VAT1
    Related
    FBpp0084695
    Conserved Domains (2) summary
    sd00017
    Location:233 → 253
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam07776
    Location:19 → 99
    zf-AD; Zinc-finger associated domain (zf-AD)

  2. NM_001276115.1 → NP_001263044.1  uncharacterized protein Dmel_CG1647, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001263044.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KH87
    Conserved Domains (2) summary
    sd00017
    Location:229 → 249
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam07776
    Location:19 → 95
    zf-AD; Zinc-finger associated domain (zf-AD)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4KH87 A0A0B4KH87
Q9VAT1 Q9VAT1

Gene LinkOut

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