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Msantd5f6 Myb/SANT DNA binding domain containing 5 family member 6 [ Mus musculus (house mouse) ]

Gene ID: 433719, updated on 27-Nov-2024

Summary

Official Symbol
Msantd5f6provided by MGI
Official Full Name
Myb/SANT DNA binding domain containing 5 family member 6provided by MGI
Primary source
MGI:MGI:3650704
See related
Ensembl:ENSMUSG00000066137 AllianceGenome:MGI:3650704
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm11487
Summary
This gene belongs to a family of related genes tandemly arranged in two clusters on chromosome 4. This family, which appears to be mouse-specific and composed of multiple highly similar members, is supported by limited transcript data. Members of the family maintain an intact open reading frame although the encoded protein has no known function. This gene is inferred from alignment of paralogous transcripts. [provided by RefSeq, Apr 2013]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Msantd5f6 in Genome Data Viewer
Location:
4 C3; 4 36.06 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (73319269..73325641, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (73401032..73407404, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene PRP4 pre-mRNA processing factor 4 homolog B pseudogene Neighboring gene predicted gene, 25769 Neighboring gene STARR-seq mESC enhancer starr_10536 Neighboring gene STARR-seq mESC enhancer starr_10537 Neighboring gene ribonucleotide reductase M2 pseudogene Neighboring gene heterogeneous nuclear ribonucleoprotein D-like pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC433719

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013393.1NP_001013411.1  uncharacterized protein LOC433719

    See identical proteins and their annotated locations for NP_001013411.1

    Status: PREDICTED

    Source sequence(s)
    BX247953
    Consensus CDS
    CCDS51205.1
    UniProtKB/TrEMBL
    E9Q5Z9, Q5RIS0
    Related
    ENSMUSP00000081520.5, ENSMUST00000084480.6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    73319269..73325641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250063.1XP_011248365.1  uncharacterized protein LOC433719 isoform X1

    UniProtKB/TrEMBL
    E9Q5Z9