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LOC4336081 betaine aldehyde dehydrogenase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336081, updated on 3-Dec-2024

Summary

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Gene symbol
LOC4336081
Gene description
betaine aldehyde dehydrogenase 1-like
Locus tag
OSNPB_040464200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
BADH; BADH1; OsBADH1
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Genomic context

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See LOC4336081 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23665796..23670723, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (23171479..23176326, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g11690-like Neighboring gene heavy metal-associated isoprenylated plant protein 16 Neighboring gene protein NRT1/ PTR FAMILY 6.4 Neighboring gene plant UBX domain-containing protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa). Tang W, et al. Plant Mol Biol, 2014 Nov. PMID 25150410
  2. Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa). He Q, et al. PLoS One, 2015. PMID 26258482, Free PMC Article
  3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. analysis of BADH1 and BADH2 in rice (Oryza sativa) reveals that BADH2 was domesticated during rice evolution, while BADH1 was not selected by human beings
    Title: Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa).
  2. Data indicate that betaine-aldehyde dehydrogenase (AK103582; OsBADH1) was ubiquitously expressed in different organs, including roots, stems, leaves and flowers.
    Title: RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa).
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
betaine aldehyde dehydrogenase 1
Names
LOC_Os04g39020
OSJNBa0060P14.8
betaine-aldehyde dehydrogenase
NP_001406345.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419416.1 → NP_001406345.1  betaine aldehyde dehydrogenase 1

    Status: VALIDATED

    Source sequence(s)
    AK103582, CB663530, CB663531, CI537109, CI740704
    UniProtKB/Swiss-Prot
    O24174, Q0JCK7, Q7F9Q3
    UniProtKB/TrEMBL
    A0A8F9RW61, A0A8F9RWA4, A0A8F9RWQ6, A0A8F9RWW2, A0A8F9RX70, A0A8F9WJE3, A0A8F9WKC1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    23665796..23670723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O24174.1 GenPept UniProtKB/Swiss-Prot:O24174

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials