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CG5938 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 43290, updated on 9-Dec-2024

Summary

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Official Symbol
CG5938provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0046247
Locus tag
Dmel_CG5938
See related
AllianceGenome:FB:FBgn0046247
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BEST:LD40095; Dmel\CG5938
Summary
Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to several human genes including CHIC2 (cysteine rich hydrophobic domain 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG5938 in Genome Data Viewer
Location:
97F1-97F1; 3-93 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (27274794..27277418)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (23100516..23103140)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene lethal (3) malignant brain tumor Neighboring gene uncharacterized protein Neighboring gene martik Neighboring gene uncharacterized protein Neighboring gene bigmax Neighboring gene Hemomucin Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-language models facilitate discovery of the molecular signatures regulating sleep and activity. Peng D, et al. Nat Commun, 2024 May 1. PMID 38693116, Free PMC Article
  2. Time-resolved mapping of genetic interactions to model rewiring of signaling pathways. Heigwer F, et al. Elife, 2018 Dec 28. PMID 30592458, Free PMC Article
  3. Proteomic Analysis of the Ubiquitin Landscape in the Drosophila Embryonic Nervous System and the Adult Photoreceptor Cells. Ramirez J, et al. PLoS One, 2015. PMID 26460970, Free PMC Article
  4. Identification of genes that promote or inhibit olfactory memory formation in Drosophila. Walkinshaw E, et al. Genetics, 2015 Apr. PMID 25644700, Free PMC Article
  5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG5938-PA
CG5938-PB
CG5938-PC
CG5938-PD
CG5938-PF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    27274794..27277418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_170333.2 → NP_733212.1  uncharacterized protein Dmel_CG5938, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_733212.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JRE5, Q0KI06
    Related
    FBpp0084530
    Conserved Domains (1) summary
    pfam10256
    Location:49 → 137
    Erf4; Golgin subfamily A member 7/ERF4 family

  2. NM_001104477.2 → NP_001097947.2  uncharacterized protein Dmel_CG5938, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097947.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JRE5, Q0KI06
    Conserved Domains (1) summary
    pfam10256
    Location:49 → 137
    Erf4; Golgin subfamily A member 7/ERF4 family

  3. NM_170332.2 → NP_733211.1  uncharacterized protein Dmel_CG5938, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_733211.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JRE5, Q0KI06
    Related
    FBpp0084529
    Conserved Domains (1) summary
    pfam10256
    Location:49 → 137
    Erf4; Golgin subfamily A member 7/ERF4 family

  4. NM_143296.3 → NP_651553.2  uncharacterized protein Dmel_CG5938, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651553.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JRE5, Q0KI06
    Related
    FBpp0084532
    Conserved Domains (1) summary
    pfam10256
    Location:49 → 137
    Erf4; Golgin subfamily A member 7/ERF4 family

  5. NM_170331.3 → NP_733210.1  uncharacterized protein Dmel_CG5938, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_733210.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JRE5, Q0KI06
    Related
    FBpp0084531
    Conserved Domains (1) summary
    pfam10256
    Location:49 → 137
    Erf4; Golgin subfamily A member 7/ERF4 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0KI06 Q0KI06
Q8T015 Q8T015

Gene LinkOut

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