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LOC4328362 ethylene-responsive transcription factor 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328362, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328362
Gene description
ethylene-responsive transcription factor 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4328362 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3172556..3173600, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3163923..3165409, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene thiosulfate sulfurtransferase 16, chloroplastic Neighboring gene translation factor GUF1 homolog, chloroplastic-like Neighboring gene protein MEI2-like 7 Neighboring gene EH domain-containing protein 1 Neighboring gene probable arabinose 5-phosphate isomerase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor 3
Names
B1103G11.12
P0419H03.32
putative ethylene responsive element binding factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    3172556..3173600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768337.3 → XP_015623823.1  ethylene-responsive transcription factor 3

    UniProtKB/TrEMBL
    Q6ET47
    Conserved Domains (1) summary
    smart00380
    Location:23 → 79
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
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