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RGP1 RGP1 homolog, RAB6A GEF complex partner 1 [ Gallus gallus (chicken) ]

Gene ID: 431658, updated on 17-Aug-2024

Summary

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Official Symbol
RGP1provided by CGNC
Official Full Name
RGP1 homolog, RAB6A GEF complex partner 1provided by CGNC
Primary source
CGNC:1708
See related
Ensembl:ENSGALG00010009704
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RGP1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (9661441..9671234, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (9661441..9671234, complement)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene natriuretic peptide receptor 2 Neighboring gene microseminoprotein, prostate associated Neighboring gene glucosylceramidase beta 2 Neighboring gene avidin-like Neighboring gene avidin-related protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • KIAA0258

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of Ric1-Rgp1 guanyl-nucleotide exchange factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RAB6A-GEF complex partner protein 2
Names
retrograde Golgi transport protein RGP1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031611.3 → NP_001026782.2  RAB6A-GEF complex partner protein 2

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000087
    UniProtKB/TrEMBL
    A0A8V0YBU0, F1NZ59
    Related
    ENSGALP00010013414.1, ENSGALT00010023186.1
    Conserved Domains (1) summary
    pfam08737
    Location:91 → 327
    Rgp1; Rgp1

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9661441..9671234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015277354.3 → XP_015132840.2  RAB6A-GEF complex partner protein 2 isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9661441..9671234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046935347.1 → XP_046791303.1  RAB6A-GEF complex partner protein 2 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials