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CG13616 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42917, updated on 4-Jan-2025

Summary

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Official Symbol
CG13616provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0039200
Locus tag
Dmel_CG13616
See related
AllianceGenome:FB:FBgn0039200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG13616
Summary
Is expressed in embryonic anal pad and embryonic large intestine. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG13616 in Genome Data Viewer
Location:
96A1-96A1; 3-85 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24392889..24393762)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20218611..20219484)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene nicotinic Acetylcholine Receptor alpha1 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR43455 Neighboring gene long non-coding RNA:CR45950 Neighboring gene long non-coding RNA:CR45649

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes. Bhutkar A, et al. Genetics, 2008 Jul. PMID 18622036, Free PMC Article
  2. Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Menoret D, et al. Genome Biol, 2013 Aug 23. PMID 23972280, Free PMC Article
  3. Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis. Lebo MS, et al. BMC Genomics, 2009 Feb 13. PMID 19216785, Free PMC Article
  4. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235
  5. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG13616-PA
CG13616-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    24392889..24393762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001300575.1 → NP_001287504.1  uncharacterized protein Dmel_CG13616, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287504.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4LHK6

  2. NM_143005.3 → NP_651262.1  uncharacterized protein Dmel_CG13616, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651262.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VC75
    Related
    FBpp0084002
    Conserved Domains (1) summary
    smart00718
    Location:110 → 212
    DM4_12; DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4LHK6 A0A0B4LHK6
Q9VC75 Q9VC75

Gene LinkOut

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