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CG17780 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42914, updated on 4-Jan-2025

Summary

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Official Symbol
CG17780provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0039197
Locus tag
Dmel_CG17780
See related
AllianceGenome:FB:FBgn0039197
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RE41041; Dmel\CG17780
Summary
Is expressed in several structures, including dorsal head epidermis primordium; embryonic anal pad; embryonic/larval midgut primordium; epithelium; and gut section. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG17780 in Genome Data Viewer
Location:
96A1-96A1; 3-85 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24382920..24385052, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20208642..20210774, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene HDC15381 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes. Bhutkar A, et al. Genetics, 2008 Jul. PMID 18622036, Free PMC Article
  2. Novel protein domains and repeats in Drosophila melanogaster: insights into structure, function, and evolution. Ponting CP, et al. Genome Res, 2001 Dec. PMID 11731489
  3. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
  4. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article
  5. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG17780-PA
CG17780-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    24382920..24385052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_143002.2 → NP_651259.1  uncharacterized protein Dmel_CG17780, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651259.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SXI0
    Related
    FBpp0084006
    Conserved Domains (1) summary
    cl11657
    Location:133 → 220
    DM4_12; DM4/DM12 family

  2. NM_170143.2 → NP_732995.1  uncharacterized protein Dmel_CG17780, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732995.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VC78
    Related
    FBpp0084005
    Conserved Domains (2) summary
    smart00718
    Location:253 → 338
    DM4_12; DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function
    pfam07841
    Location:136 → 188
    DM4_12; DM4/DM12 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8SXI0 Q8SXI0
Q9VC78 Q9VC78

Gene LinkOut

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