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CG13609 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42883, updated on 9-Dec-2024

Summary

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Official Symbol
CG13609provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0039170
Locus tag
Dmel_CG13609
See related
AllianceGenome:FB:FBgn0039170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG13609
Summary
Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of mediator complex and transcription regulator complex. Orthologous to human PTOV1 (PTOV1 extended AT-hook containing adaptor protein). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See CG13609 in Genome Data Viewer
Location:
95F3-95F3; 3-84 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24227023..24228538)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20052745..20054260)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene twin Neighboring gene uncharacterized protein Neighboring gene caravaggio Neighboring gene long non-coding RNA:CR45217 Neighboring gene Sp1-like factor for pairing sensitive-silencing Neighboring gene long non-coding RNA:CR44092 Neighboring gene Spase 22/23-subunit Neighboring gene Accessory gland protein 95EF Neighboring gene multiple ankyrin repeats single KH domain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cis-regulatory-directed pipeline for the identification of genes involved in cardiac development and disease. Nim HT, et al. Genome Biol, 2021 Dec 15. PMID 34906219, Free PMC Article
  2. Comparative genomics of accessory gland protein genes in Drosophila melanogaster and D. pseudoobscura. Wagstaff BJ, et al. Mol Biol Evol, 2005 Apr. PMID 15601888
  3. Molecular pathogenesis of peripheral neuropathies: insights from Drosophila models. Bussmann J, et al. Curr Opin Genet Dev, 2017 Jun. PMID 28213160
  4. Genome-wide association analysis of oxidative stress resistance in Drosophila melanogaster. Weber AL, et al. PLoS One, 2012. PMID 22496853, Free PMC Article
  5. Identification of genes that promote or inhibit olfactory memory formation in Drosophila. Walkinshaw E, et al. Genetics, 2015 Apr. PMID 25644700, Free PMC Article

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of mediator complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG13609-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    24227023..24228538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_142976.5 → NP_651233.1  uncharacterized protein Dmel_CG13609 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651233.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9VCB1
    Related
    FBpp0083945
    Conserved Domains (1) summary
    pfam11232
    Location:45 → 189
    Med25; Mediator complex subunit 25 PTOV activation and synapsin 2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VCB1.1 Q9VCB1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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Chemical Information
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