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CG5902 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42839, updated on 9-Dec-2024

Summary

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Official Symbol
CG5902provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0039136
Locus tag
Dmel_CG5902
See related
AllianceGenome:FB:FBgn0039136
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-WO0118547.372; Dmel\CG5902
Summary
Is expressed in organism. Human ortholog(s) of this gene implicated in midface hypoplasia, hearing impairment, elliptocytosis, and nephrocalcinosis. Orthologous to human AMMECR1 (AMMECR nuclear protein 1) and AMMECR1L (AMMECR1 like). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG5902 in Genome Data Viewer
Location:
95D4-95D5; 3-82 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (23986642..23988738)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (19812364..19814460)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene mimi Neighboring gene mir-9381 stem loop Neighboring gene uncharacterized protein Neighboring gene Ecdysteroid phosphate phosphatase Neighboring gene Rab7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic screening of a Drosophila ORF library in vivo uncovers Wnt/Wg pathway components. Schertel C, et al. Dev Cell, 2013 Apr 29. PMID 23583758
  2. Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila. Meltzer H, et al. Nat Commun, 2019 May 8. PMID 31068592, Free PMC Article
  3. Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach. Pazos Obregón F, et al. BMC Genomics, 2015 Sep 15. PMID 26370122, Free PMC Article
  4. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573, Free PMC Article
  5. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG5902-PA
CG5902-PB
CG5902-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    23986642..23988738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_142944.4 → NP_651201.1  uncharacterized protein Dmel_CG5902, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651201.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4V3B3, Q9VCF0
    UniProtKB/TrEMBL
    E1JIV0
    Related
    FBpp0083890
    Conserved Domains (1) summary
    pfam01871
    Location:50 → 219
    AMMECR1; AMMECR1

  2. NM_001170234.2 → NP_001163705.1  uncharacterized protein Dmel_CG5902, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163705.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4V3B3, Q9VCF0
    UniProtKB/TrEMBL
    E1JIV0
    Conserved Domains (1) summary
    pfam01871
    Location:50 → 219
    AMMECR1; AMMECR1

  3. NM_170106.4 → NP_732929.1  uncharacterized protein Dmel_CG5902, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732929.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4V3B3, Q9VCF0
    UniProtKB/TrEMBL
    E1JIV0
    Related
    FBpp0083889
    Conserved Domains (1) summary
    pfam01871
    Location:50 → 219
    AMMECR1; AMMECR1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E1JIV0 E1JIV0
Q9VCF0.1 Q9VCF0

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