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RpS3 Ribosomal protein S3 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42761, updated on 9-Dec-2024

Summary

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Official Symbol
RpS3provided by FlyBase
Official Full Name
Ribosomal protein S3provided by FlyBase
Primary source
FLYBASE:FBgn0002622
Locus tag
Dmel_CG6779
See related
AllianceGenome:FB:FBgn0002622
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
6779; CG6779; chr3R:19185518..19185701; Dmel\CG6779; DmRpS3; dS3; IP15838p; M; M(3)124; M(3)95A; M(3)B; M(3)B2; M(3)Fla; M(3)w; M(3R)w; M95A; Mw; M[[w]]; Rp S3; rps3; rpS3; Rps3; RPS3; RS3; S3; X72921
Summary
Enables class I DNA-(apurinic or apyrimidinic site) endonuclease activity; oxidized purine DNA binding activity; and oxidized purine nucleobase lesion DNA N-glycosylase activity. A structural constituent of ribosome. Involved in DNA repair and negative regulation of neuron apoptotic process. Located in cytosolic ribosome and nuclear matrix. Is expressed in adult head; adult heart; organism; and ovary. Used to study intrinsic cardiomyopathy. Orthologous to human RPS3 (ribosomal protein S3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See RpS3 in Genome Data Viewer
Location:
94E13-94E13; 3-78 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (23358812..23360207)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (19184534..19185929)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene ATP synthase, coupling factor 6 Neighboring gene Secretory 13 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44322

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conversion of the bifunctional 8-oxoguanine/beta-delta apurinic/apyrimidinic DNA repair activities of Drosophila ribosomal protein S3 into the human S3 monofunctional beta-elimination catalyst through a single amino acid change. Hegde V, et al. J Biol Chem, 2001 Jul 20. PMID 11353770
  2. RpS3 Is Required for Spermatogenesis of Drosophila melanogaster. Fang Y, et al. Cells, 2023 Feb 10. PMID 36831240, Free PMC Article
  3. The Drosophila S3 multifunctional DNA repair/ribosomal protein protects Fanconi anemia cells against oxidative DNA damaging agents. Kelley MR, et al. Mutat Res, 2001 Mar 7. PMID 11182542
  4. Ribosomal protein insufficiency and the minute syndrome in Drosophila: a dose-response relationship. Saebøe-Larssen S, et al. Genetics, 1998 Mar. PMID 9539436, Free PMC Article
  5. Characterization and mechanism of action of Drosophila ribosomal protein S3 DNA glycosylase activity for the removal of oxidatively damaged DNA bases. Deutsch WA, et al. J Biol Chem, 1997 Dec 26. PMID 9407063

See all (176) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RpS3 Is Required for Spermatogenesis of Drosophila melanogaster.
    Title: RpS3 Is Required for Spermatogenesis of Drosophila melanogaster.
  2. Xrp1 and Irbp18 trigger a feed-forward loop of proteotoxic stress to induce the loser status.
    Title: Xrp1 and Irbp18 trigger a feed-forward loop of proteotoxic stress to induce the loser status.
  3. dOgg1 and RpS3 in mitochondria increase cell survival after exposure to the nitric oxide donor SNAP
    Title: Effects of ectopic expression of Drosophila DNA glycosylases dOgg1 and RpS3 in mitochondria.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables class I DNA-(apurinic or apyrimidinic site) endonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables damaged DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables oxidized purine DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables oxidized purine nucleobase lesion DNA N-glycosylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome HDA PubMed 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in cytoplasmic translation IC
Inferred by Curator
more info
 PubMed 
involved_in cytoplasmic translation TAS
Traceable Author Statement
more info
 PubMed 
involved_in mitotic cell cycle HMP PubMed 
involved_in negative regulation of neuron apoptotic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of apoptotic signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosolic ribosome HDA PubMed 
located_in cytosolic ribosome IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic small ribosomal subunit TAS
Traceable Author Statement
more info
 PubMed 
located_in nuclear matrix IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosomal protein S3
Names
CG6779-PA
CG6779-PB
Minute(3)95A
RpS3-PA
RpS3-PB
minute
rps3 gene
NP_001287481.1
NP_476632.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    23358812..23360207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001300552.1 → NP_001287481.1  ribosomal protein S3, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287481.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q06559, Q9VCM9
    UniProtKB/TrEMBL
    G3M3A2, Q29QY2
    Conserved Domains (1) summary
    PTZ00084
    Location:6 → 222
    PTZ00084; 40S ribosomal protein S3; Provisional

  2. NM_057284.6 → NP_476632.1  ribosomal protein S3, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_476632.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q06559, Q9VCM9
    UniProtKB/TrEMBL
    G3M3A2, Q29QY2
    Related
    FBpp0083802
    Conserved Domains (1) summary
    PTZ00084
    Location:6 → 222
    PTZ00084; 40S ribosomal protein S3; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
G3M3A2 G3M3A2
Q06559.1 Q06559

Gene LinkOut

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