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SORCS1 sortilin related VPS10 domain containing receptor 1 [ Gallus gallus (chicken) ]

Gene ID: 423885, updated on 17-Aug-2024

Summary

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Symbol
SORCS1provided by CGNC
Full Name
sortilin related VPS10 domain containing receptor 1provided by CGNC
Primary source
CGNC:6419
See related
Ensembl:ENSGALG00010020170
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SORCS1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
38
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (25914097..26469021, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (25805808..26081151, complement)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111061 Neighboring gene uncharacterized LOC121111062 Neighboring gene uncharacterized LOC121111203 Neighboring gene uncharacterized LOC121111205 Neighboring gene uncharacterized LOC124418089 Neighboring gene X-prolyl aminopeptidase (aminopeptidase P) 1, soluble Neighboring gene uncharacterized LOC124418090 Neighboring gene adducin 3 (gamma)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VPS10 domain-containing receptor SorCS1; LOW QUALITY PROTEIN: VPS10 domain-containing receptor SorCS1
Names
VPS10 domain receptor protein SORCS 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    25914097..26469021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025151802.3 → XP_025007570.1  VPS10 domain-containing receptor SorCS1 isoform X5

    Conserved Domains (3) summary
    TIGR00864
    Location:573 → 743
    PCC; polycystin cation channel protein
    smart00602
    Location:9 → 550
    VPS10; VPS10 domain
    pfam00801
    Location:564 → 637
    PKD; PKD domain

  2. XM_025151799.3 → XP_025007567.2  VPS10 domain-containing receptor SorCS1 isoform X4

    Conserved Domains (3) summary
    TIGR00864
    Location:840 → 1010
    PCC; polycystin cation channel protein
    smart00089
    Location:860 → 911
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    smart00602
    Location:220 → 817
    VPS10; VPS10 domain

  3. XM_025151797.3 → XP_025007565.2  VPS10 domain-containing receptor SorCS1 isoform X2

    Conserved Domains (3) summary
    TIGR00864
    Location:840 → 1010
    PCC; polycystin cation channel protein
    smart00089
    Location:860 → 911
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    smart00602
    Location:220 → 817
    VPS10; VPS10 domain

  4. XM_025151796.3 → XP_025007564.2  VPS10 domain-containing receptor SorCS1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZC64
    Related
    ENSGALP00010028799.1, ENSGALT00010048725.1
    Conserved Domains (3) summary
    TIGR00864
    Location:840 → 1010
    PCC; polycystin cation channel protein
    smart00089
    Location:860 → 911
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    smart00602
    Location:220 → 817
    VPS10; VPS10 domain

  5. XM_040702989.1 → XP_040558923.1  VPS10 domain-containing receptor SorCS1 isoform X5

    Conserved Domains (3) summary
    TIGR00864
    Location:573 → 743
    PCC; polycystin cation channel protein
    smart00602
    Location:9 → 550
    VPS10; VPS10 domain
    pfam00801
    Location:564 → 637
    PKD; PKD domain

  6. XM_025151798.3 → XP_025007566.2  VPS10 domain-containing receptor SorCS1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZC64

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    25805808..26081151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040675012.2 → XP_040530946.1  LOW QUALITY PROTEIN: VPS10 domain-containing receptor SorCS1 isoform X6

    Conserved Domains (3) summary
    smart00089
    Location:860 → 911
    PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
    smart00602
    Location:220 → 817
    VPS10; VPS10 domain
    COG3291
    Location:860 → 1021
    COG3291; PKD repeat [Function unknown]
Nucleotide Protein Strain
Heading Accession and Version

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