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FAM179B family with sequence similarity 179 member B [ Gallus gallus (chicken) ]

Gene ID: 423595, updated on 3-Dec-2024

Summary

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Symbol
FAM179Bprovided by CGNC
Full Name
family with sequence similarity 179 member Bprovided by CGNC
Primary source
CGNC:66458
See related
Ensembl:ENSGALG00010018312 Ensembl:ENSGALG00010018348
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
TOGARAM1
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Genomic context

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See FAM179B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
40
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (58562538..58614000, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (58437773..58489207, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751884 Neighboring gene MIS18 binding protein 1 Neighboring gene Fanconi anemia complementation group M Neighboring gene small nucleolar RNA SNORD127 Neighboring gene SOUL protein Neighboring gene FK506 binding protein 3 Neighboring gene myosin heavy chain IB-like Neighboring gene kelch like family member 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • KIAA0423

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOG array regulator of axonemal microtubules protein 1; pre-mRNA-processing factor 39
Names
TOG array regulator of axonemal microtubules 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    58562538..58614000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040701840.2 → XP_040557774.1  pre-mRNA-processing factor 39 isoform X5

    Conserved Domains (1) summary
    COG5107
    Location:115 → 482
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  2. XM_040701841.2 → XP_040557775.1  pre-mRNA-processing factor 39 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2U6Y4
    Conserved Domains (1) summary
    COG5107
    Location:100 → 467
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  3. XM_003641432.6 → XP_003641480.1  pre-mRNA-processing factor 39 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2U6Y4
    Related
    ENSGALP00010026284.1, ENSGALT00010044193.1
    Conserved Domains (1) summary
    COG5107
    Location:100 → 467
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  4. XM_015276786.4 → XP_015132272.1  pre-mRNA-processing factor 39 isoform X7

    UniProtKB/TrEMBL
    A0A1D5P3L6
    Related
    ENSGALP00010026275.1, ENSGALT00010044180.1
    Conserved Domains (1) summary
    COG5107
    Location:40 → 334
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  5. XM_046942133.1 → XP_046798089.1  pre-mRNA-processing factor 39 isoform X7

    UniProtKB/TrEMBL
    A0A1D5P3L6

  6. XM_046942131.1 → XP_046798087.1  TOG array regulator of axonemal microtubules protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z5K3

  7. XM_046942130.1 → XP_046798086.1  TOG array regulator of axonemal microtubules protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z5K3
    Related
    ENSGALP00010026408.1, ENSGALT00010044371.1

  8. XM_040701839.2 → XP_040557773.1  TOG array regulator of axonemal microtubules protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z5K3

  9. XM_046942132.1 → XP_046798088.1  TOG array regulator of axonemal microtubules protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z5K3

RNA

  1. XR_006939380.1 RNA Sequence

    Related
    ENSGALT00010044407.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    58437773..58489207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040672926.2 → XP_040528860.1  pre-mRNA-processing factor 39 isoform X5

    Conserved Domains (1) summary
    COG5107
    Location:115 → 482
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  2. XM_040672929.2 → XP_040528863.1  pre-mRNA-processing factor 39 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2U6Y4
    Conserved Domains (1) summary
    COG5107
    Location:100 → 467
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  3. XM_040672927.2 → XP_040528861.1  pre-mRNA-processing factor 39 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2U6Y4
    Conserved Domains (1) summary
    COG5107
    Location:100 → 467
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  4. XM_040672932.2 → XP_040528866.1  pre-mRNA-processing factor 39 isoform X7

    UniProtKB/TrEMBL
    A0A1D5P3L6
    Conserved Domains (1) summary
    COG5107
    Location:40 → 334
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  5. XM_046918998.1 → XP_046774954.1  pre-mRNA-processing factor 39 isoform X7

    UniProtKB/TrEMBL
    A0A1D5P3L6

  6. XM_046918996.1 → XP_046774952.1  TOG array regulator of axonemal microtubules protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z5K3

  7. XM_046918995.1 → XP_046774951.1  TOG array regulator of axonemal microtubules protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z5K3

  8. XM_040672925.1 → XP_040528859.1  TOG array regulator of axonemal microtubules protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z5K3

  9. XM_046918997.1 → XP_046774953.1  TOG array regulator of axonemal microtubules protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z5K3

RNA

  1. XR_006934794.1 RNA Sequence

Nucleotide Protein Strain
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