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pad poils au dos [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41981, updated on 4-Jan-2025

Summary

Official Symbol
padprovided by FlyBase
Official Full Name
poils au dosprovided by FlyBase
Primary source
FLYBASE:FBgn0038418
Locus tag
Dmel_CG10309
See related
AllianceGenome:FB:FBgn0038418
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG10309; Dmel\CG10309
Summary
Enables DNA binding activity. Involved in chaeta morphogenesis and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in chromosome. Is expressed in embryonic brain; larval ventral nerve cord; and organism. Orthologous to human ZNF623 (zinc finger protein 623). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See pad in Genome Data Viewer
Location:
89B13-89B13; 3-58 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16342318..16345829)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (12168040..12171551)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Sulfated Neighboring gene uncharacterized protein Neighboring gene Splicing factor 2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Mesencephalic astrocyte-derived neurotrophic factor Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables chromatin insulator sequence binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in chaeta morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in chromosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
poils au dos
Names
CG10309-PB
pad-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    16342318..16345829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_142277.3NP_650534.2  poils au dos [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650534.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4V6V1, Q9VEW6
    Conserved Domains (4) summary
    smart00868
    Location:1687
    zf-AD; Zinc-finger associated domain (zf-AD)
    sd00017
    Location:710730
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:766788
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:752777
    zf-H2C2_2; Zinc-finger double domain