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zgc:86738 zgc:86738 [ Danio rerio (zebrafish) ]

Gene ID: 415231, updated on 9-Dec-2024

Summary

Official Symbol
zgc:86738provided by ZNC
Official Full Name
zgc:86738provided by ZNC
Primary source
ZFIN:ZDB-GENE-040625-151
See related
Ensembl:ENSDARG00000102207 AllianceGenome:ZFIN:ZDB-GENE-040625-151
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in membrane. Is expressed in yolk syncytial layer. [provided by Alliance of Genome Resources, Dec 2024]
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See zgc:86738 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_008805358.1 (1..3873, complement)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805358.1 (1..3873, complement)

NW_008805358.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Transmembrane protein 150A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002141.1NP_001002141.1  Transmembrane protein 150A-like

    See identical proteins and their annotated locations for NP_001002141.1

    Status: PROVISIONAL

    Source sequence(s)
    BC071413
    UniProtKB/TrEMBL
    Q6IQJ3
    Related
    ENSDARP00000134371.2, ENSDART00000170366.2
    Conserved Domains (1) summary
    pfam10277
    Location:4232
    Frag1; Frag1/DRAM/Sfk1 family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NW_008805358.1 Reference GRCz11 Primary Assembly

    Range
    1..3873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)