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CG1142 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40894, updated on 4-Jan-2025

Summary

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Official Symbol
CG1142provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0037504
Locus tag
Dmel_CG1142
See related
AllianceGenome:FB:FBgn0037504
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG1142
Summary
Predicted to enable RNA binding activity. Predicted to be involved in RNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human DNTTIP2 (deoxynucleotidyltransferase terminal interacting protein 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG1142 in Genome Data Viewer
Location:
84D8-84D8; 3-48 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (7472458..7473781, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (3298180..3299503, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44934 Neighboring gene transfer RNA:Valine-CAC 2-3 Neighboring gene small Cajal body-specific RNA : MeU5-C46 Neighboring gene small nuclear RNA 7SK a Neighboring gene transfer RNA:Valine-CAC 2-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A small nucleolar guide RNA functions both in 2'-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA. Jády BE, et al. EMBO J, 2001 Feb 1. PMID 11157760, Free PMC Article
  2. Developmentally regulated expression and expression strategies of Drosophila snoRNAs. Angrisani A, et al. Insect Biochem Mol Biol, 2015 Jun. PMID 25641266
  3. The pentameric nucleoplasmin fold is present in Drosophila FKBP39 and a large number of chromatin-related proteins. Edlich-Muth C, et al. J Mol Biol, 2015 May 22. PMID 25813344, Free PMC Article
  4. Comparative Genomic Analyses Provide New Insights into the Evolutionary Dynamics of Heterochromatin in Drosophila. Caizzi R, et al. PLoS Genet, 2016 Aug. PMID 27513559, Free PMC Article
  5. RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins. Lu Z, et al. Genome Biol, 2014 Jan 7. PMID 24393626, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in RNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG1142-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    7472458..7473781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_176415.3 → NP_788592.1  uncharacterized protein Dmel_CG1142 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_788592.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8STI6
    Related
    FBpp0081082
    Conserved Domains (1) summary
    pfam08698
    Location:164 → 254
    Fcf2; Fcf2 pre-rRNA processing
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8STI6 Q8STI6

Gene LinkOut

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