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esrrgb estrogen-related receptor gamma b [ Danio rerio (zebrafish) ]

Gene ID: 407691, updated on 9-Dec-2024

Summary

Official Symbol
esrrgbprovided by ZNC
Official Full Name
estrogen-related receptor gamma bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040616-4
See related
Ensembl:ENSDARG00000011696 AllianceGenome:ZFIN:ZDB-GENE-040616-4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
errb/g; esrrgl; errbeta/gamma
Summary
Predicted to enable estrogen response element binding activity and nuclear receptor activity. Acts upstream of or within otic vesicle development and otolith formation. Predicted to be located in chromatin. Predicted to be active in nucleus. Orthologous to human ESRRG (estrogen related receptor gamma). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See esrrgb in Genome Data Viewer
Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (46790163..46817205, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (46886505..46913492, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:ch211-57i17.5 Neighboring gene fasciculation and elongation protein zeta 2b Neighboring gene G patch domain containing 2 Neighboring gene lipin 1b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables estrogen response element binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables hormone binding IEA
Inferred from Electronic Annotation
more info
 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclear receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chromatin IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
estrogen-related receptor gamma b
Names
NR3B2/3
estrogen-related receptor beta/gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128678.2NP_001122150.2  estrogen-related receptor gamma b

    Status: VALIDATED

    Source sequence(s)
    BX004824
    UniProtKB/TrEMBL
    A0A8M2B7T3, B3DIZ0, B3DIZ7, Q5RJ38
    Related
    ENSDARP00000091109.4, ENSDART00000100336.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    46790163..46817205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)