U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

psip1b PC4 and SFRS1 interacting protein 1b [ Danio rerio (zebrafish) ]

Gene ID: 407619, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
psip1bprovided by ZNC
Official Full Name
PC4 and SFRS1 interacting protein 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3273
See related
Ensembl:ENSDARG00000077405 AllianceGenome:ZFIN:ZDB-GENE-030131-3273
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc32f04; wu:fc32f04; si:ch211-116m6.3
Summary
Predicted to be involved in chromatin remodeling. Predicted to be active in nucleus. Orthologous to human PSIP1 (PC4 and SRSF1 interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See psip1b in Genome Data Viewer
Location:
chromosome: 23
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (45200342..45225861)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (45486969..45512541)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein basonuclin-2 Neighboring gene coiled-coil domain containing 171 Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene complement factor I

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

General protein information

Go to the top of the page Help
Preferred Names
PC4 and SFRS1 interacting protein 1b; axoneme-associated protein mst101(2)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    45200342..45225861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470060.2 → XP_021325735.1  axoneme-associated protein mst101(2)

    UniProtKB/TrEMBL
    A0A8M9PTS2, A0A8M9PX56
    Related
    ENSDARP00000010777.8, ENSDART00000004357.8
    Conserved Domains (3) summary
    cd05834
    Location:14 → 93
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    pfam11467
    Location:1440 → 1534
    LEDGF; Lens epithelium-derived growth factor (LEDGF)
    cl26511
    Location:586 → 1321
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials