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EX895_004113 hypothetical protein [ Sporisorium graminicola ]

Gene ID: 40727008, updated on 21-Dec-2023

Summary

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Gene symbol
EX895_004113
Gene description
hypothetical protein
Locus tag
EX895_004113
Gene type
protein coding
RNA name
uncharacterized protein
RefSeq status
PROVISIONAL
Organism
Sporisorium graminicola (strain: CBS 10092, nat-host: Phleum pratense, culture-collection: CBS:10092, type-material: type material of Sporisorium graminicola)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium
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Genomic context

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See EX895_004113 in Genome Data Viewer
Location:
chromosome: SGRAM_22
Exon count:
1
Sequence:
Chromosome: SGRAM_22; NC_043731.1 (1238961..1240379, complement)

Chromosome SGRAM_22 - NC_043731.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043731.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_043731.1 Reference assembly

    Range
    1238961..1240379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029884710.1 → XP_029739420.1  hypothetical protein EX895_004113 [Sporisorium graminicola]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A4U7KS95
    Conserved Domains (1) summary
    cl15692
    Location:184 → 363
    CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily
Nucleotide Protein
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