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SGCE sarcoglycan epsilon [ Bos taurus (domestic cattle) ]

Gene ID: 407209, updated on 30-Jan-2025

Summary

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Official Symbol
SGCEprovided by VGNC
Official Full Name
sarcoglycan epsilonprovided by VGNC
Primary source
VGNC:VGNC:34538
See related
EnsemblRapid:ENSBTAG00070001257
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SGCE in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (11992413..12063687, complement)

Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345065 Neighboring gene collagen type I alpha 2 chain Neighboring gene CAS1 domain containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene paternally expressed 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. Analysis of imprinted messenger RNA expression during bovine preimplantation development. Ruddock NT, et al. Biol Reprod, 2004 Apr. PMID 14668210
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epsilon-sarcoglycan
Names
epsilon-SG

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075145.1 → NP_001068613.1  epsilon-sarcoglycan

    See identical proteins and their annotated locations for NP_001068613.1

    Status: PROVISIONAL

    Source sequence(s)
    BC113276
    UniProtKB/Swiss-Prot
    Q29S03
    UniProtKB/TrEMBL
    A0AAA9S9D8
    Related
    ENSBTAP00070001711.1, ENSBTAT00070002914.1
    Conserved Domains (1) summary
    pfam05510
    Location:34 → 418
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    11992413..12063687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010803992.4 → XP_010802294.2  epsilon-sarcoglycan isoform X6

    UniProtKB/TrEMBL
    F1MYZ0
    Related
    ENSBTAP00070001735.1, ENSBTAT00070002939.1
    Conserved Domains (1) summary
    pfam05510
    Location:34 → 410
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_015468070.3 → XP_015323556.1  epsilon-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0AAA9S9D8
    Conserved Domains (1) summary
    pfam05510
    Location:34 → 419
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_010803990.4 → XP_010802292.1  epsilon-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0AAA9T6H0
    Conserved Domains (1) summary
    pfam05510
    Location:73 → 446
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  4. XM_015468060.3 → XP_015323546.1  epsilon-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    F1MYZ0
    Conserved Domains (1) summary
    pfam05510
    Location:73 → 446
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  5. XM_010803989.4 → XP_010802291.1  epsilon-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A3Q1LK26, A0AAA9S9D8
    Related
    ENSBTAP00070001718.1, ENSBTAT00070002921.1
    Conserved Domains (1) summary
    pfam05510
    Location:73 → 455
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  6. XM_015468052.3 → XP_015323538.1  epsilon-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    F1MYZ0
    Conserved Domains (1) summary
    pfam05510
    Location:73 → 455
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  7. XM_024990507.2 → XP_024846275.1  epsilon-sarcoglycan isoform X7

    UniProtKB/TrEMBL
    A0AAA9T6H0
    Related
    ENSBTAP00070001710.1, ENSBTAT00070002913.1
    Conserved Domains (1) summary
    pfam05510
    Location:34 → 409
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q29S03.3 GenPept UniProtKB/Swiss-Prot:Q29S03

Gene LinkOut

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