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slc25a55a solute carrier family 25 member 55a [ Danio rerio (zebrafish) ]

Gene ID: 406717, updated on 9-Dec-2024

Summary

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Official Symbol
slc25a55aprovided by ZNC
Official Full Name
solute carrier family 25 member 55aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2745
See related
Ensembl:ENSDARG00000020893 AllianceGenome:ZFIN:ZDB-GENE-040426-2745
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb229; sb:cb229; slc25a22; zgc:56592; wu:fa12h05; wu:fb72h03
Summary
Predicted to enable L-aspartate transmembrane transporter activity and L-glutamate transmembrane transporter activity. Predicted to be involved in L-glutamate transmembrane transport; aspartate transmembrane transport; and malate-aspartate shuttle. Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Is expressed in several structures, including EVL; epidermis; mesoderm; nervous system; and periderm. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See slc25a55a in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (49095642..49107046)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (49096972..49108394)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 5 member 8, like Neighboring gene thyroid stimulating hormone subunit beta a Neighboring gene tetraspanin 2a Neighboring gene uncharacterized LOC137496020 Neighboring gene nerve growth factor b (beta polypeptide)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of WSB1 gene as an important regulator in the development of zebrafish embryo during midblastula transition. Lv W, et al. Acta Biochim Biophys Sin (Shanghai), 2008 Jun. PMID 18535746
  2. Uniform gene expression in embryos is achieved by temporal averaging of transcription noise. Stapel LC, et al. Genes Dev, 2017 Aug 15. PMID 28903980, Free PMC Article
  3. Targeted Gene Expression in Zebrafish Exposed to Chlorpyrifos-Oxon Confirms Phenotype-Specific Mechanisms Leading to Adverse Outcomes. Garcia-Reyero N, et al. Bull Environ Contam Toxicol, 2016 Jun. PMID 27086301, Free PMC Article
  4. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  5. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables L-aspartate transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-glutamate transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-glutamate transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in L-glutamate transmembrane transport ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in aspartate transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in malate-aspartate shuttle IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial inner membrane ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
solute carrier family 25 member 55a
Names
solute carrier family 25 (mitochondrial carrier: glutamate), member 22

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213408.1 → NP_998573.1  solute carrier family 25 member 55a

    See identical proteins and their annotated locations for NP_998573.1

    Status: PROVISIONAL

    Source sequence(s)
    BC051620
    UniProtKB/TrEMBL
    A0A2R8RN92, Q6DI03, Q7ZTT6
    Related
    ENSDARP00000094162.3, ENSDART00000103385.4
    Conserved Domains (2) summary
    PTZ00169
    Location:1 → 292
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:3 → 97
    Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    49095642..49107046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005172109.4 → XP_005172166.1  solute carrier family 25 member 55a isoform X2

    See identical proteins and their annotated locations for XP_005172166.1

    UniProtKB/TrEMBL
    A0A8M2BJZ1
    Conserved Domains (1) summary
    pfam00153
    Location:123 → 205
    Mito_carr; Mitochondrial carrier protein

  2. XM_009302668.3 → XP_009300943.1  solute carrier family 25 member 55a isoform X2

    See identical proteins and their annotated locations for XP_009300943.1

    UniProtKB/TrEMBL
    A0A8M2BJZ1
    Conserved Domains (1) summary
    pfam00153
    Location:123 → 205
    Mito_carr; Mitochondrial carrier protein

  3. XM_017356461.2 → XP_017211950.1  solute carrier family 25 member 55a isoform X1

    UniProtKB/TrEMBL
    A0A2R8RN92, Q6DI03, Q7ZTT6
    Conserved Domains (2) summary
    PTZ00169
    Location:1 → 292
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:3 → 97
    Mito_carr; Mitochondrial carrier protein

  4. XM_005172105.5 → XP_005172162.1  solute carrier family 25 member 55a isoform X1

    See identical proteins and their annotated locations for XP_005172162.1

    UniProtKB/TrEMBL
    A0A2R8RN92, Q6DI03, Q7ZTT6
    Conserved Domains (2) summary
    PTZ00169
    Location:1 → 292
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:3 → 97
    Mito_carr; Mitochondrial carrier protein

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394668.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    197006..206449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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