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actr1b actin related protein 1B [ Danio rerio (zebrafish) ]

Gene ID: 406681, updated on 4-Jan-2025

Summary

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Official Symbol
actr1bprovided by ZNC
Official Full Name
actin related protein 1Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2695
See related
Ensembl:ENSDARG00000011611 AllianceGenome:ZFIN:ZDB-GENE-040426-2695
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
actr1; zehn1110; zgc:56317; wu:fc22g09; wu:fc56d01; wu:fy52e08; hm:zehn1110
Summary
Predicted to be part of dynactin complex. Orthologous to human ACTR1B (actin related protein 1B). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See actr1b in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (42521970..42540839)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (42693590..42712459)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene neuropeptide Y receptor Y8a Neighboring gene membrane-associated ring finger (C3HC4) 5, like Neighboring gene potassium channel tetramerization domain containing 9b Neighboring gene fibroblast growth factor receptor 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Downregulation of GSTK1 Is a Common Mechanism Underlying Hypertrophic Cardiomyopathy. Sasagawa S, et al. Front Pharmacol, 2016. PMID 27378925, Free PMC Article
  2. Dynactin1 depletion leads to neuromuscular synapse instability and functional abnormalities. Bercier V, et al. Mol Neurodegener, 2019 Jul 10. PMID 31291987, Free PMC Article
  3. Identification, characterization, and mapping of expressed sequence tags from an embryonic zebrafish heart cDNA library. Ton C, et al. Genome Res, 2000 Dec. PMID 11116087, Free PMC Article
  4. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
  5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC113996

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
part_of dynactin complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
actin related protein 1B
Names
ARP1 actin related protein 1, centractin
ARP1 actin-related protein 1 homolog B
actin related protein 1, centractin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213372.1 → NP_998537.1  actin related protein 1B

    See identical proteins and their annotated locations for NP_998537.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046069
    UniProtKB/TrEMBL
    A0A8N1TQK8, Q7ZUZ2
    Related
    ENSDARP00000015781.7, ENSDART00000010420.9
    Conserved Domains (1) summary
    cl17037
    Location:5 → 376
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    42521970..42540839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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