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rab41 RAB41, member RAS oncogene family [ Danio rerio (zebrafish) ]

Gene ID: 406674, updated on 4-Jan-2025

Summary

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Official Symbol
rab41provided by ZNC
Official Full Name
RAB41, member RAS oncogene familyprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2686
See related
Ensembl:ENSDARG00000029885 AllianceGenome:ZFIN:ZDB-GENE-040426-2686
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63637; wu:fi30c11
Summary
Predicted to enable GTPase activity. Predicted to be involved in several processes, including Golgi vesicle transport; protein localization to Golgi membrane; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Orthologous to human RAB41 (RAB41, member RAS oncogene family). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human all
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Genomic context

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See rab41 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (33280718..33297314, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (32940404..32957043, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene PDZ domain containing 11 Neighboring gene START domain containing 14 Neighboring gene septin 6 Neighboring gene sosondowah ankyrin repeat domain family d

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A high-resolution mRNA expression time course of embryonic development in zebrafish. White RJ, et al. Elife, 2017 Nov 16. PMID 29144233, Free PMC Article
  2. A plasmid library of full-length zebrafish rab proteins for in vivo cell biology. Hall TE, et al. Cell Logist, 2017. PMID 28396820, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC113973

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein localization to Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ras-related protein Rab-41

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213365.1 → NP_998530.1  ras-related protein Rab-41

    See identical proteins and their annotated locations for NP_998530.1

    Status: PROVISIONAL

    Source sequence(s)
    BC058059
    UniProtKB/TrEMBL
    Q6PEH6
    Related
    ENSDARP00000045554.3, ENSDART00000045555.5
    Conserved Domains (2) summary
    smart00175
    Location:17 → 174
    RAB; Rab subfamily of small GTPases
    cd01861
    Location:17 → 177
    Rab6; Rab GTPase family 6 (Rab6)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    33280718..33297314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173246.5 → XP_005173303.1  ras-related protein Rab-41 isoform X3

    See identical proteins and their annotated locations for XP_005173303.1

    UniProtKB/TrEMBL
    A0A8M2BKK6, Q4V957
    Related
    ENSDARP00000069541.5, ENSDART00000075056.7
    Conserved Domains (2) summary
    smart00175
    Location:17 → 174
    RAB; Rab subfamily of small GTPases
    cd01861
    Location:17 → 177
    Rab6; Rab GTPase family 6 (Rab6)

  2. XM_005173245.5 → XP_005173302.1  ras-related protein Rab-41 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BKK4, E9QE54
    Related
    ENSDARP00000117395.1, ENSDART00000138294.2
    Conserved Domains (2) summary
    smart00175
    Location:17 → 174
    RAB; Rab subfamily of small GTPases
    cd01861
    Location:17 → 177
    Rab6; Rab GTPase family 6 (Rab6)

  3. XM_005173247.5 → XP_005173304.1  ras-related protein Rab-41 isoform X2

    UniProtKB/TrEMBL
    A0A2R8QLH1, A0A8M2BKK1
    Conserved Domains (2) summary
    smart00175
    Location:17 → 174
    RAB; Rab subfamily of small GTPases
    cd01861
    Location:17 → 177
    Rab6; Rab GTPase family 6 (Rab6)

RNA

  1. XR_658191.4 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394917.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    244395..261125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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