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ubl3b ubiquitin-like 3b [ Danio rerio (zebrafish) ]

Gene ID: 405782, updated on 9-Dec-2024

Summary

Official Symbol
ubl3bprovided by ZNC
Official Full Name
ubiquitin-like 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040630-4
See related
Ensembl:ENSDARG00000021556 AllianceGenome:ZFIN:ZDB-GENE-040630-4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ubl3; zgc:103712
Summary
Predicted to be located in plasma membrane. Orthologous to human UBL3 (ubiquitin like 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See ubl3b in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (30854553..30876709, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (30514326..30536408, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene atlastin 3 Neighboring gene cofilin 1 Neighboring gene serine protease 23 Neighboring gene solute carrier family 7 member 3b Neighboring gene si:ch211-126c2.4 Neighboring gene forkhead box O4

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
ubiquitin-like protein 3b
Names
ubiquitin-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212856.1NP_998021.1  ubiquitin-like protein 3b

    See identical proteins and their annotated locations for NP_998021.1

    Status: PROVISIONAL

    Source sequence(s)
    AY398427
    UniProtKB/TrEMBL
    A0A8M1PFW1, Q6TGS9
    Related
    ENSDARP00000147305.1, ENSDART00000180305.1
    Conserved Domains (1) summary
    pfam13881
    Location:8114
    Rad60-SLD_2; Ubiquitin-2 like Rad60 SUMO-like

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    30854553..30876709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157231.5XP_005157288.1  ubiquitin-like protein 3b isoform X2

    See identical proteins and their annotated locations for XP_005157288.1

    UniProtKB/TrEMBL
    A0A8M1PFW1, Q6TGS9
    Related
    ENSDARP00000120146.1, ENSDART00000147597.2
    Conserved Domains (1) summary
    pfam13881
    Location:8114
    Rad60-SLD_2; Ubiquitin-2 like Rad60 SUMO-like
  2. XM_068213181.1XP_068069282.1  ubiquitin-like protein 3b isoform X1