U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type [ Bos taurus (domestic cattle) ]

Gene ID: 404167, updated on 27-Dec-2024

Summary

Go to the top of the page Help
Gene symbol
GCNT3
Gene description
glucosaminyl (N-acetyl) transferase 3, mucin type
See related
BGD:BT16850; Ensembl:ENSBTAG00000009443
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GCNT3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (50634339..50639503, complement)

Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA19 Neighboring gene BCL2 interacting protein 2 Neighboring gene general transcription factor IIA subunit 2 Neighboring gene family with sequence similarity 81 member A Neighboring gene myosin IE Neighboring gene uncharacterized LOC132346373

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Mucin biosynthesis: bovine C2GnT-M gene, tissue-specific expression, and herpes virus-4 homologue. Choi KH, et al. Am J Respir Cell Mol Biol, 2004 May. PMID 14592928
  2. The core 2 beta-1,6-N-acetylglucosaminyltransferase-mucin encoded by bovine herpesvirus 4 was acquired from an ancestor of the African buffalo. Markine-Goriaynoff N, et al. J Virol, 2003 Feb. PMID 12525612, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3
Names
C2GnT-M
C2GnT-mucin type
bC2GnT-M
mucus-type core 2 beta-1,6-N-acetylglucosaminyltransferase
NP_991378.1
XP_005211713.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205809.1 → NP_991378.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3

    See identical proteins and their annotated locations for NP_991378.1

    Status: PROVISIONAL

    Source sequence(s)
    AY283764
    UniProtKB/Swiss-Prot
    Q7YQE1, Q7YQF8, Q866Z3
    Related
    ENSBTAP00000087286.1, ENSBTAT00000133056.1
    Conserved Domains (1) summary
    pfam02485
    Location:136 → 403
    Branch; Core-2/I-Branching enzyme

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    50634339..50639503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005211656.5 → XP_005211713.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 isoform X1

    See identical proteins and their annotated locations for XP_005211713.1

    UniProtKB/Swiss-Prot
    Q7YQE1, Q7YQF8, Q866Z3
    Related
    ENSBTAP00000087062.1, ENSBTAT00000128578.1
    Conserved Domains (1) summary
    pfam02485
    Location:136 → 403
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7YQE1.1 GenPept UniProtKB/Swiss-Prot:Q7YQE1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.