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CG11456 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40309, updated on 9-Dec-2024

Summary

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Official Symbol
CG11456provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0037031
Locus tag
Dmel_CG11456
See related
AllianceGenome:FB:FBgn0037031
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG11456
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including central brain primordium; ganglia; germline cell; gonad; and ventral nerve cord primordium. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG11456 in Genome Data Viewer
Location:
77F1-77F1; 3-47 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (20841987..20844340)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (20835087..20837440)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR45943 Neighboring gene uncharacterized protein Neighboring gene COP9 signalosome subunit 3 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44686 Neighboring gene Seminal fluid protein 77F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomics of Recombination Rate Variation in Temperature-Evolved Drosophila melanogaster Populations. Winbush A, et al. Genome Biol Evol, 2021 Jan 7. PMID 33247719, Free PMC Article
  2. A Comprehensive Drosophila melanogaster Transcription Factor Interactome. Shokri L, et al. Cell Rep, 2019 Apr 16. PMID 30995488, Free PMC Article
  3. A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development. Schertel C, et al. Genome Res, 2015 Apr. PMID 25568052, Free PMC Article
  4. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. Leung W, et al. G3 (Bethesda), 2015 Mar 4. PMID 25740935, Free PMC Article
  5. Transcriptional regulators form diverse groups with context-dependent regulatory functions. Stampfel G, et al. Nature, 2015 Dec 3. PMID 26550828

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific ISS
Inferred from Sequence or Structural Similarity
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG11456-PA
CG11456-PB
CG11456-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    20841987..20844340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001170013.2 → NP_001163484.1  uncharacterized protein Dmel_CG11456, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163484.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6NL58
    Conserved Domains (1) summary
    sd00017
    Location:232 → 253
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. NM_141008.2 → NP_649265.1  uncharacterized protein Dmel_CG11456, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649265.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VPA2
    Related
    FBpp0077922
    Conserved Domains (1) summary
    sd00017
    Location:232 → 253
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. NM_001275201.1 → NP_001262130.1  uncharacterized protein Dmel_CG11456, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262130.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VPA2
    Conserved Domains (1) summary
    sd00017
    Location:232 → 253
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NL58 Q6NL58
Q9VPA2 Q9VPA2

Gene LinkOut

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