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znf706 zinc finger protein 706 [ Danio rerio (zebrafish) ]

Gene ID: 402905, updated on 9-Dec-2024

Summary

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Official Symbol
znf706provided by ZNC
Official Full Name
zinc finger protein 706provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-454
See related
Ensembl:ENSDARG00000056307 AllianceGenome:ZFIN:ZDB-GENE-040718-454
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92624
Summary
Predicted to be located in cytoplasm and nucleus. Orthologous to human ZNF706 (zinc finger protein 706). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See znf706 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (12206158..12212865, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (12286630..12293337, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene poly A binding protein, cytoplasmic 1 b Neighboring gene small nucleolar RNA SNORA5 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Neighboring gene uncharacterized LOC108180138 Neighboring gene grainyhead-like transcription factor 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 706

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001198889.2 → NP_001185818.1  zinc finger protein 706

    See identical proteins and their annotated locations for NP_001185818.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, 3 and 4 encode the same protein.
    Source sequence(s)
    BX294657, EH605393
    UniProtKB/TrEMBL
    A8KBQ0, I3IRY3, Q6TGY0
    Related
    ENSDARP00000125642.1, ENSDART00000151599.3
    Conserved Domains (1) summary
    pfam04419
    Location:1 → 37
    4F5; 4F5 protein family

  2. NM_001198890.2 → NP_001185819.1  zinc finger protein 706

    See identical proteins and their annotated locations for NP_001185819.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3 and 4 encode the same protein.
    Source sequence(s)
    BX294657, EH605393
    UniProtKB/TrEMBL
    A8KBQ0, I3IRY3, Q6TGY0
    Related
    ENSDARP00000126143.1, ENSDART00000142077.2
    Conserved Domains (1) summary
    pfam04419
    Location:1 → 37
    4F5; 4F5 protein family

  3. NM_001198891.2 → NP_001185820.1  zinc finger protein 706

    See identical proteins and their annotated locations for NP_001185820.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3 and 4 encode the same protein.
    Source sequence(s)
    BX294657, CT724627, EH605393
    UniProtKB/TrEMBL
    A8KBQ0, I3IRY3, Q6TGY0
    Related
    ENSDARP00000118294.1, ENSDART00000140834.2
    Conserved Domains (1) summary
    pfam04419
    Location:1 → 37
    4F5; 4F5 protein family

  4. NM_205612.3 → NP_991175.1  zinc finger protein 706

    See identical proteins and their annotated locations for NP_991175.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3 and 4 encode the same protein.
    Source sequence(s)
    BX294657, EH439585, EH605393
    UniProtKB/TrEMBL
    A8KBQ0, I3IRY3, Q6TGY0
    Related
    ENSDARP00000073242.3, ENSDART00000078781.5
    Conserved Domains (1) summary
    pfam04419
    Location:1 → 37
    4F5; 4F5 protein family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    12206158..12212865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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