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tmem179ba transmembrane protein 179Ba [ Danio rerio (zebrafish) ]

Gene ID: 402849, updated on 9-Dec-2024

Summary

Official Symbol
tmem179baprovided by ZNC
Official Full Name
transmembrane protein 179Baprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-510
See related
Ensembl:ENSDARG00000056233 AllianceGenome:ZFIN:ZDB-GENE-050522-510
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tmem179b; im:6903984; zgc:110591
Summary
Predicted to be located in membrane. Orthologous to human TMEM179B (transmembrane protein 179B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See tmem179ba in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (19909774..19923251, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (19657806..19671283, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 151B Neighboring gene si:ch211-285j22.3 Neighboring gene prospero homeobox 3 Neighboring gene sorting nexin 15

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020489.2NP_001018325.1  transmembrane protein 179B

    See identical proteins and their annotated locations for NP_001018325.1

    Status: VALIDATED

    Source sequence(s)
    CR339062
    UniProtKB/Swiss-Prot
    Q503H7, Q7T392
    Related
    ENSDARP00000073155.2, ENSDART00000078694.4

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    19909774..19923251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394684.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    60051..73528 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)