cavin2a caveolae associated protein 2a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cavin2aprovided by ZNC
Official Full Name: caveolae associated protein 2aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-090313-215
See related: Ensembl:ENSDARG00000027611 AllianceGenome:ZFIN:ZDB-GENE-090313-215
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sdpr; sdpra; si:dkey-191g15.1
Summary: Predicted to enable protein kinase C binding activity. Predicted to be located in membrane. Predicted to be active in caveola and cytoplasm. Is expressed in trigeminal placode. Orthologous to human CAVIN2 (caveolae associated protein 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (24223052..24242590, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (24412183..24431721, complement)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein kinase C binding	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in caveola	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: caveolae-associated protein 2a

Names: serum deprivation response a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001277070.1 → NP_001263999.1 caveolae-associated protein 2a

Status: VALIDATED

Source sequence(s)

CT867952, EH449341

UniProtKB/TrEMBL

A0A8M1P540, F1Q688

Related

ENSDARP00000030479.6, ENSDART00000039399.7

Conserved Domains (1) summary

pfam15237
Location:71 → 331

PTRF_SDPR; PTRF/SDPR family