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CG5274 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40257, updated on 9-Dec-2024

Summary

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Official Symbol
CG5274provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0036987
Locus tag
Dmel_CG5274
See related
AllianceGenome:FB:FBgn0036987
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG5274
Summary
Orthologous to human INTS15 (integrator complex subunit 15). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG5274 in Genome Data Viewer
Location:
77C2-77C2; 3-47 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (20426199..20427666, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (20419299..20420766, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene zye Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Lipoic acid synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cytoplasmic binding partners of the Integrator endonuclease INTS11 and its paralog CPSF73 are required for their nuclear function. Lin MH, et al. Mol Cell, 2024 Aug 8. PMID 39032490,
  2. A network model of the molecular organization of chromatin in Drosophila. van Bemmel JG, et al. Mol Cell, 2013 Feb 21. PMID 23438860
  3. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. Leung W, et al. G3 (Bethesda), 2015 Mar 4. PMID 25740935, Free PMC Article
  4. Comprehensive Identification and Alternative Splicing of Microexons in Drosophila. Pang TL, et al. Front Genet, 2021. PMID 33859668, Free PMC Article
  5. Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions. Erives AJ. Dev Genes Evol, 2015 Sep. PMID 26173873, Free PMC Article

See all (28) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
part_of integrator complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of integrator complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
Names
CG5274-PA
CG5274-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    20426199..20427666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_168854.2 → NP_730532.1  uncharacterized protein Dmel_CG5274, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_730532.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VPF9
    Related
    FBpp0077889
    Conserved Domains (1) summary
    pfam14964
    Location:14 → 360
    DUF4507; Domain of unknown function (DUF4507)

  2. NM_140965.3 → NP_649222.1  uncharacterized protein Dmel_CG5274, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649222.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VPF9
    Related
    FBpp0077890
    Conserved Domains (1) summary
    pfam14964
    Location:14 → 360
    DUF4507; Domain of unknown function (DUF4507)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VPF9 Q9VPF9

Gene LinkOut

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