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ATP11AUN ATP11A upstream neighbor lncRNA [ Homo sapiens (human) ]

Gene ID: 400165, updated on 17-Sep-2024

Summary

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Official Symbol
ATP11AUNprovided by HGNC
Official Full Name
ATP11A upstream neighbor lncRNAprovided by HGNC
Primary source
HGNC:HGNC:33793
See related
Ensembl:ENSG00000197595 AllianceGenome:HGNC:33793
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SMABLO1; C13orf35
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See ATP11AUN in Genome Data Viewer
Location:
13q34
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (112647044..112684497)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (111894873..111932532)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (113301358..113338811)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:113032121-113033320 Neighboring gene uncharacterized LOC105370372 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:113046012-113046542 Neighboring gene sperm acrosome associated 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113161934-113162852 Neighboring gene tubulin gamma complex component 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:113233725-113234278 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5529 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5530 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5531 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113242463-113243282 Neighboring gene uncharacterized LOC124903251 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5533 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:113271950-113272450 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:113279517-113280017 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113291197-113291866 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:113296973-113297156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:113302064-113302958 Neighboring gene Sharpr-MPRA regulatory region 9322 Neighboring gene uncharacterized LOC102725228 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113343189-113343706 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5535 Neighboring gene NANOG hESC enhancer GRCh37_chr13:113346005-113346506 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113356801-113357507 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113358129-113358672 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113368127-113368956 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:113373763-113374962 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:113377535-113378036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113378763-113379342 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113379343-113379922 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113383173-113383972 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113385574-113386373 Neighboring gene ATPase phospholipid transporting 11A Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113387175-113387973 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113388178-113388911 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113388912-113389644 Neighboring gene Sharpr-MPRA regulatory region 8271 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:113391352-113391852 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:113391853-113392353 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:113400527-113401048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:113401693-113402192 Neighboring gene ATP11A antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Common variants at 10 genomic loci influence hemoglobin A₁(C) levels via glycemic and nonglycemic pathways. Soranzo N, et al. Diabetes, 2010 Dec. PMID 20858683, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Common variants at 10 genomic loci influence hemoglobin A₁(C) levels via glycemic and nonglycemic pathways.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Homology

Other Names

  • putative ATP11A upstream neighbor protein
  • putative protein ATP11AUN
  • small blood protein 1

Clone Names

  • FLJ26443

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164109.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139384
    Related
    ENST00000623100.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    112647044..112684497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    111894873..111932532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207440.2: Suppressed sequence

    Description
    NM_207440.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZP68.1 GenPept UniProtKB/Swiss-Prot:Q6ZP68

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