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LOC396480 keratin [ Gallus gallus (chicken) ]

Gene ID: 396480, updated on 3-Dec-2024

Summary

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Symbol
LOC396480provided by CGNC
Full Name
keratinprovided by CGNC
Primary source
CGNC:49829
See related
Ensembl:ENSGALG00010028513
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
sKer
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Genomic context

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See LOC396480 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (1410530..1416745)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (1411808..1418031)

Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene scale keratin-like Neighboring gene keratin Neighboring gene scale keratin-like Neighboring gene scale keratin-like Neighboring gene scale keratin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comparison of genomic coding sequences for feather and scale keratins: structural and evolutionary implications. Gregg K, et al. EMBO J, 1984 Jan. PMID 6200321, Free PMC Article
  2. Expression of beta-keratin genes during development of avian skin appendages. Shames RB, et al. Curr Top Dev Biol, 1987. PMID 2443313
  3. Isolation and characterisation of keratin mRNA from the scale epidermis of the embryonic chick. Wilton SD, et al. Biochim Biophys Acta, 1985 Mar 20. PMID 2578818
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scale keratin
Names
S-ker

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277979.1 → NP_001264908.1  scale keratin

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000349
    UniProtKB/Swiss-Prot
    P04459, P87483, P87484
    UniProtKB/TrEMBL
    H9KZL7
    Conserved Domains (1) summary
    pfam02422
    Location:13 → 70
    Keratin

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1410530..1416745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046903921.1 → XP_046759877.1  scale keratin isoform X1

    UniProtKB/Swiss-Prot
    P04459, P87483, P87484
    UniProtKB/TrEMBL
    H9KZL7
    Related
    ENSGALP00010042489.1, ENSGALT00010069047.1

  2. XM_040652322.2 → XP_040508256.1  scale keratin isoform X1

    UniProtKB/Swiss-Prot
    P04459, P87483, P87484
    UniProtKB/TrEMBL
    H9KZL7
    Conserved Domains (1) summary
    pfam02422
    Location:13 → 70
    Keratin

  3. XM_046903920.1 → XP_046759876.1  scale keratin isoform X1

    UniProtKB/Swiss-Prot
    P04459, P87483, P87484
    UniProtKB/TrEMBL
    H9KZL7
    Related
    ENSGALP00010042487.1, ENSGALT00010069045.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1411808..1418031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046932565.1 → XP_046788521.1  scale keratin isoform X1

    UniProtKB/Swiss-Prot
    P04459, P87483, P87484
    UniProtKB/TrEMBL
    H9KZL7

  2. XM_046932566.1 → XP_046788522.1  scale keratin isoform X1

    UniProtKB/Swiss-Prot
    P04459, P87483, P87484
    UniProtKB/TrEMBL
    H9KZL7

  3. XM_046932564.1 → XP_046788520.1  scale keratin isoform X1

    UniProtKB/Swiss-Prot
    P04459, P87483, P87484
    UniProtKB/TrEMBL
    H9KZL7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P04459.3 GenPept UniProtKB/Swiss-Prot:P04459

Gene LinkOut

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Molecular Biology Databases
Research Materials