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C8Q69DRAFT_96206 putative transcription factor [ Paecilomyces variotii ]

Gene ID: 39603500, updated on 31-Oct-2024

Summary

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Gene symbol
C8Q69DRAFT_96206
Gene description
putative transcription factor
Locus tag
C8Q69DRAFT_96206
See related
FungiDB:C8Q69DRAFT_96206; VEuPathDB:C8Q69DRAFT_96206
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Paecilomyces variotii (strain: CBS 101075, culture-collection: CBS:101075, type-material: culture from holotype of Talaromyces spectabilis)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Thermoascaceae; Paecilomyces
Orthologs
Aspergillus fumigatus all
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Genomic context

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See C8Q69DRAFT_96206 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_021167152.1Genomic Context describing neighboring genes Neighboring gene transaldolase Neighboring gene superoxide dismutase [Cu-Zn] Neighboring gene putative phosphatidylinositol transporter Neighboring gene kinase-like domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021167152.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales). Urquhart AS, et al. Front Microbiol, 2018. PMID 30619145, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative transcription factor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_021167152.1 Reference assembly

    Range
    327922..331200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028634223.1 → XP_028482025.1  putative transcription factor [Paecilomyces variotii]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A443HKP5, V5FDN4
    Conserved Domains (4) summary
    smart00318
    Location:487 → 620
    SNc; Staphylococcal nuclease homologues
    pfam00567
    Location:653 → 774
    TUDOR; Tudor domain
    cl00140
    Location:831 → 879
    SNc; Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
    cl29560
    Location:324 → 457
    SNc; Staphylococcal nuclease homologues
Nucleotide Protein
Heading Accession and Version