PDE6C phosphodiesterase 6C [Gallus gallus (chicken)] - Gene

Summary

Symbol: PDE6Cprovided by CGNC
Full Name: phosphodiesterase 6Cprovided by CGNC
Primary source: CGNC:49504
See related: Ensembl:ENSGALG00010020320
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	6	NC_052537.1 (21147554..21176169, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	6	NC_052578.1 (21038897..21067517, complement)

Chromosome 6 - NC_052537.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

PDE6Csts1 (e-PCR), detects polymorphism
- UniSTS:280236

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in signal transduction	IEA Inferred from Electronic Annotation more info	PubMed
involved_in visual perception	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha'

Names: cGMP phosphodiesterase 6C; cone cGMP phosphodiesterase a'-subunit; phosphodiesterase 6C, cGMP-specific, cone, alpha prime

NP_990317.1

EC 3.1.4.35

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_204986.1 → NP_990317.1 cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha'

See identical proteins and their annotated locations for NP_990317.1

Status: PROVISIONAL

Source sequence(s)

L29233

UniProtKB/Swiss-Prot

P52731

UniProtKB/TrEMBL

F1P429

Related

ENSGALP00010029007.1, ENSGALT00010049058.1

Conserved Domains (2) summary

smart00065
Location:76 → 234

GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases

pfam00233
Location:561 → 806

PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

21147554..21176169 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

21038897..21067517 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)