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chic2 cysteine-rich hydrophobic domain 2 [ Danio rerio (zebrafish) ]

Gene ID: 394095, updated on 9-Dec-2024

Summary

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Official Symbol
chic2provided by ZNC
Official Full Name
cysteine-rich hydrophobic domain 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-778
See related
Ensembl:ENSDARG00000022690 AllianceGenome:ZFIN:ZDB-GENE-040426-778
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:55670
Summary
Predicted to be located in membrane. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CHIC2 (cysteine rich hydrophobic domain 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See chic2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (14406082..14416437)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (13719632..13729924)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene D(1) dopamine receptor-like Neighboring gene FIP1 like 1b (S. cerevisiae) Neighboring gene OCIA domain-containing protein 1-like Neighboring gene solute carrier family 34 member 2a antisense Neighboring gene solute carrier family 34 member 2a Neighboring gene recombination signal binding protein for immunoglobulin kappa J region a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Expression of zebrafish cxcl8 (interleukin-8) and its receptors during development and in response to immune stimulation. Oehlers SH, et al. Dev Comp Immunol, 2010 Mar. PMID 19941893
  2. Gene Characterization of Nocturnin Paralogues in Goldfish: Full Coding Sequences, Structure, Phylogeny and Tissue Expression. Madera D, et al. Int J Mol Sci, 2023 Dec 19. PMID 38203224, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC55670

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cysteine-rich hydrophobic domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201120.2 → NP_957414.2  cysteine-rich hydrophobic domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    BX530018
    UniProtKB/TrEMBL
    B2GQV0, F6P931, Q802W1
    Related
    ENSDARP00000034195.5, ENSDART00000030083.6

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    14406082..14416437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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