U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

dnase1l4.2 deoxyribonuclease 1 like 4, tandem duplicate 2 [ Danio rerio (zebrafish) ]

Gene ID: 393843, updated on 4-Jan-2025

Summary

Official Symbol
dnase1l4.2provided by ZNC
Official Full Name
deoxyribonuclease 1 like 4, tandem duplicate 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1884
See related
Ensembl:ENSDARG00000011376 AllianceGenome:ZFIN:ZDB-GENE-040426-1884
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:77816
Summary
Predicted to enable DNA binding activity and deoxyribonuclease I activity. Predicted to be involved in DNA catabolic process. Predicted to be active in nucleus. Orthologous to human DNASE1L1 (deoxyribonuclease 1 like 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See dnase1l4.2 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (5682635..5700482)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (5652766..5670636)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 51 Neighboring gene deoxyribonuclease 1 like 4, tandem duplicate 1 Neighboring gene translation machinery associated 7 homolog Neighboring gene wu:fc11c11 Neighboring gene piggyBac transposable element derived 4

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC77816

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables DNA nuclease activity IEA
Inferred from Electronic Annotation
more info
 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 
enables deoxyribonuclease I activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in DNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within DNA catabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
deoxyribonuclease 1 like 4, tandem duplicate 2
Names
deoxyribonuclease gamma-like

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200869.1NP_957163.1  deoxyribonuclease 1 like 4, tandem duplicate 2

    See identical proteins and their annotated locations for NP_957163.1

    Status: PROVISIONAL

    Source sequence(s)
    BC063237
    UniProtKB/TrEMBL
    A0A8M2B8E4, Q6P4U8
    Related
    ENSDARP00000012226.6, ENSDART00000019854.8
    Conserved Domains (1) summary
    cd10282
    Location:2262
    DNase1; Deoxyribonuclease 1

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    5682635..5700482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005161626.3XP_005161683.1  deoxyribonuclease 1 like 4, tandem duplicate 2 isoform X1

    See identical proteins and their annotated locations for XP_005161683.1

    UniProtKB/TrEMBL
    A0A8M2B8E4, Q6P4U8
    Conserved Domains (1) summary
    cd10282
    Location:2262
    DNase1; Deoxyribonuclease 1
  2. XM_005161627.5XP_005161684.1  deoxyribonuclease 1 like 4, tandem duplicate 2 isoform X1

    See identical proteins and their annotated locations for XP_005161684.1

    UniProtKB/TrEMBL
    A0A8M2B8E4, Q6P4U8
    Conserved Domains (1) summary
    cd10282
    Location:2262
    DNase1; Deoxyribonuclease 1
  3. XM_005161625.5XP_005161682.1  deoxyribonuclease 1 like 4, tandem duplicate 2 isoform X1

    See identical proteins and their annotated locations for XP_005161682.1

    UniProtKB/TrEMBL
    A0A8M2B8E4, Q6P4U8
    Conserved Domains (1) summary
    cd10282
    Location:2262
    DNase1; Deoxyribonuclease 1