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arl3l1 ADP ribosylation factor like GTPase 3, like 1 [ Danio rerio (zebrafish) ]

Gene ID: 393666, updated on 9-Dec-2024

Summary

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Official Symbol
arl3l1provided by ZNC
Official Full Name
ADP ribosylation factor like GTPase 3, like 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1649
See related
Ensembl:ENSDARG00000111106 AllianceGenome:ZFIN:ZDB-GENE-040426-1649
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:73049
Summary
Predicted to enable GTP binding activity. Acts upstream of or within regulation of axon extension involved in axon guidance. Predicted to be located in centrosome. Predicted to be active in cytoplasm and microtubule cytoskeleton. Is expressed in neural plate; optic vesicle; periderm; and visual system. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See arl3l1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (33172400..33185577)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (33139052..33152410)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene zgc:194629 Neighboring gene regulator of G protein signaling 14b Neighboring gene myozenin-2 Neighboring gene RNA binding motif protein 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Habenular commissure formation in zebrafish is regulated by the pineal gland-specific gene unc119c. Toyama R, et al. Dev Dyn, 2013 Sep. PMID 23749482, Free PMC Article
  2. Transcriptome profiling of zebrafish optic fissure fusion. Richardson R, et al. Sci Rep, 2019 Feb 7. PMID 30733552, Free PMC Article
  3. Gene expression profiling of zebrafish embryonic retina. Leung YF, et al. Zebrafish, 2005. PMID 18248185
  4. A systematic approach to identify functional motifs within vertebrate developmental enhancers. Li Q, et al. Dev Biol, 2010 Jan 15. PMID 19850031, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC73049

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within regulation of axon extension involved in axon guidance IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ADP ribosylation factor like GTPase 3, like 1
Names
ADP-ribosylation factor-like 3, like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200693.1 → NP_956987.1  ADP ribosylation factor like GTPase 3, like 1

    See identical proteins and their annotated locations for NP_956987.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059431
    UniProtKB/TrEMBL
    A0A8M1PBL4, Q6PC92
    Related
    ENSDARP00000149094.1, ENSDART00000183532.1
    Conserved Domains (2) summary
    smart00178
    Location:17 → 182
    SAR; Sar1p-like members of the Ras-family of small GTPases
    cd04155
    Location:8 → 181
    Arl3; Arf-like 3 (Arl3) GTPase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    33172400..33185577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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