zcchc17 zinc finger, CCHC domain containing 17 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zcchc17provided by ZNC
Official Full Name: zinc finger, CCHC domain containing 17provided by ZNC
Primary source: ZFIN:ZDB-GENE-040325-2
See related: Ensembl:ENSDARG00000018936 AllianceGenome:ZFIN:ZDB-GENE-040325-2
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ps1d; zgc:65790; zgc:85656
Summary: Predicted to enable RNA binding activity. Predicted to be involved in RNA stabilization. Predicted to be located in nucleolus. Orthologous to human ZCCHC17 (zinc finger CCHC-type containing 17). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (42996965..43004346, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (43427528..43434909, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in RNA stabilization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleolus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger CCHC domain-containing protein 17

Names: putative S1 RNA binding domain protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200544.2 → NP_956838.2 zinc finger CCHC domain-containing protein 17

See identical proteins and their annotated locations for NP_956838.2

Status: VALIDATED

Source sequence(s)

CU207343, EB846118, EH505718

UniProtKB/TrEMBL

A0A8M1PHD3, F1QI96

Related

ENSDARP00000088874.4, ENSDART00000098101.5

Conserved Domains (1) summary

cd05686
Location:16 → 89

S1_pNO40; S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. ...