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btr30 bloodthirsty-related gene family, member 30 [ Danio rerio (zebrafish) ]

Gene ID: 393394, updated on 4-Jan-2025

Summary

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Official Symbol
btr30provided by ZNC
Official Full Name
bloodthirsty-related gene family, member 30provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1407
See related
Ensembl:ENSDARG00000102591 AllianceGenome:ZFIN:ZDB-GENE-040426-1407
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:64214
Summary
Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm. Is expressed in EVL; periderm; and pharynx. Orthologous to human TRIM41 (tripartite motif containing 41). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See btr30 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (48139755..48145313)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805456.1 (3022..8976, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 Neighboring gene NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 1 Neighboring gene PR domain containing 1b, with ZNF domain Neighboring gene crystallin beta-gamma domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Down-Regulation of hspb9 and hspb11 Contributes to Wavy Notochord in Zebrafish Embryos Following Exposure to Polychlorinated Diphenylsulfides. Zhang R, et al. Environ Sci Technol, 2018 Nov 6. PMID 30335980
  2. The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. Ferg M, et al. EMBO J, 2007 Sep 5. PMID 17703193, Free PMC Article
  3. A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish. van der Aa LM, et al. BMC Biol, 2009 Feb 5. PMID 19196451, Free PMC Article
  4. Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish. Boudinot P, et al. PLoS One, 2011. PMID 21789205, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC64214

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
bloodthirsty-related gene family, member 30

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200422.1 → NP_956716.1  bloodthirsty-related gene family, member 30

    See identical proteins and their annotated locations for NP_956716.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054643
    UniProtKB/TrEMBL
    Q7T290
    Related
    ENSDARP00000131276.1, ENSDART00000170439.2
    Conserved Domains (3) summary
    pfam00643
    Location:152 → 191
    zf-B_box; B-box zinc finger
    pfam15227
    Location:13 → 52
    zf-C3HC4_4; zinc finger of C3HC4-type, RING
    cd13733
    Location:407 → 575
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    48139755..48145313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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