U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cog6 component of oligomeric golgi complex 6 [ Danio rerio (zebrafish) ]

Gene ID: 393290, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
cog6provided by ZNC
Official Full Name
component of oligomeric golgi complex 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-909
See related
Ensembl:ENSDARG00000103149 AllianceGenome:ZFIN:ZDB-GENE-040426-909
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56117; si:ch211-203f4.1
Summary
Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cog6 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (3455807..3534601, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (3468301..3547095, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 15a Neighboring gene forkhead box O1 a Neighboring gene lipoma HMGIC fusion partner-like Neighboring gene uncharacterized LOC110437885 Neighboring gene NIMA related kinase 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. FOXO genes in channel catfish and their response after bacterial infection. Gao L, et al. Dev Comp Immunol, 2019 Aug. PMID 30905685
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC56117

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
part_of Golgi transport complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
conserved oligomeric Golgi complex subunit 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001320347.1 → NP_001307276.1  conserved oligomeric Golgi complex subunit 6

    Status: VALIDATED

    Source sequence(s)
    BX649258, EH587218, EH587636, FO704837
    UniProtKB/TrEMBL
    A0A0R4IS45, A0A8M1P2Y8
    Related
    ENSDARP00000137474.2, ENSDART00000158150.2
    Conserved Domains (1) summary
    pfam06419
    Location:53 → 649
    COG6; Conserved oligomeric complex COG6

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    3455807..3534601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_200320.1: Suppressed sequence

    Description
    NM_200320.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools