ttc9c tetratricopeptide repeat domain 9C [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ttc9cprovided by ZNC
Official Full Name: tetratricopeptide repeat domain 9Cprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1053
See related: Ensembl:ENSDARG00000007025 AllianceGenome:ZFIN:ZDB-GENE-040426-1053
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:56497; im:7142077
Summary: Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Orthologous to human TTC9C (tetratricopeptide repeat domain 9C). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (45350093..45363735)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (46362801..46376443)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within cilium assembly	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within determination of heart left/right asymmetry	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within otolith morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed

General protein information

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Preferred Names: tetratricopeptide repeat protein 9C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200265.1 → NP_956559.1 tetratricopeptide repeat protein 9C

See identical proteins and their annotated locations for NP_956559.1

Status: PROVISIONAL

Source sequence(s)

BC049032

UniProtKB/TrEMBL

A0A8M1PB07, Q7ZUI3

Related

ENSDARP00000016595.7, ENSDART00000025749.8

Conserved Domains (2) summary

TIGR00990
Location:36 → 191

3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

sd00006
Location:99 → 131

TPR; TPR repeat [structural motif]