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nipsnap3a nipsnap homolog 3A (C. elegans) [ Danio rerio (zebrafish) ]

Gene ID: 393234, updated on 9-Dec-2024

Summary

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Official Symbol
nipsnap3aprovided by ZNC
Official Full Name
nipsnap homolog 3A (C. elegans)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1037
See related
Ensembl:ENSDARG00000020387 AllianceGenome:ZFIN:ZDB-GENE-040426-1037
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
nipsnap3; zgc:56466
Summary
Predicted to be involved in mitophagy. Predicted to be active in mitochondrion. Is expressed in alar plate midbrain region; digestive system; intestinal bulb primordium; and optic tectum. Orthologous to several human genes including NIPSNAP3A (nipsnap homolog 3A). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See nipsnap3a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (6520310..6526967, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (6213586..6220240, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 44 member 1b Neighboring gene ATP-binding cassette, sub-family A (ABC1), member 1B Neighboring gene uncharacterized LOC137487561 Neighboring gene probable pancreatic secretory proteinase inhibitor Neighboring gene tRNA-histidine guanylyltransferase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Proteome dynamics in neutrophils of adult zebrafish upon chemically-induced inflammation. Singh SK, et al. Fish Shellfish Immunol, 2014 Sep. PMID 25014315
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC56466

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in mitophagy IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein NipSnap homolog 3A
Names
nipsnap homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200264.3 → NP_956558.2  protein NipSnap homolog 3A

    Status: VALIDATED

    Source sequence(s)
    CT009487
    UniProtKB/TrEMBL
    A0A8M1PGX5, F1QWR0
    Related
    ENSDARP00000110906.1, ENSDART00000125058.3
    Conserved Domains (1) summary
    pfam07978
    Location:62 → 160
    NIPSNAP; NIPSNAP

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    6520310..6526967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213176.1 → XP_068069277.1  protein NipSnap homolog 3A isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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