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klhdc10 kelch domain containing 10 [ Danio rerio (zebrafish) ]

Gene ID: 393231, updated on 4-Jan-2025

Summary

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Official Symbol
klhdc10provided by ZNC
Official Full Name
kelch domain containing 10provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-776
See related
Ensembl:ENSDARG00000007764 AllianceGenome:ZFIN:ZDB-GENE-040426-776
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:55663
Summary
Predicted to be located in membrane. Orthologous to human KLHDC10 (kelch domain containing 10). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See klhdc10 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (14990931..15003893, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (14992176..15005179, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene smoothened, frizzled class receptor Neighboring gene cation/H+ exchanger protein 1 Neighboring gene zinc finger, C3HC-type containing 1 Neighboring gene ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC55663

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
kelch domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200261.1 → NP_956555.1  kelch domain-containing protein 10

    See identical proteins and their annotated locations for NP_956555.1

    Status: PROVISIONAL

    Source sequence(s)
    BC048880
    UniProtKB/TrEMBL
    A0A8N1TYD5, Q7ZUL3
    Related
    ENSDARP00000021554.5, ENSDART00000002401.7
    Conserved Domains (4) summary
    PLN02153
    Location:36 → 347
    PLN02153; epithiospecifier protein
    sd00038
    Location:159 → 207
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:266 → 308
    Kelch_1; Kelch motif
    pfam13418
    Location:42 → 95
    Kelch_4; Galactose oxidase, central domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    14990931..15003893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164695.5 → XP_005164752.1  kelch domain-containing protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BBZ4
    Conserved Domains (4) summary
    PLN02153
    Location:65 → 378
    PLN02153; epithiospecifier protein
    sd00038
    Location:190 → 238
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:297 → 339
    Kelch_1; Kelch motif
    pfam13418
    Location:73 → 126
    Kelch_4; Galactose oxidase, central domain

RNA

  1. XR_011010877.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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