U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CG13293 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38695, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
CG13293provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0035677
Locus tag
Dmel_CG13293
See related
AllianceGenome:FB:FBgn0035677
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG13293
Summary
Predicted to enable transcription corepressor activity. Predicted to be involved in DNA-templated transcription. Predicted to be active in nucleus. Is expressed in adult head. Orthologous to human SCAI (suppressor of cancer cell invasion). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CG13293 in Genome Data Viewer
Location:
65A5-65A5; 3-16 cM
Exon count:
9
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (6082883..6092188)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (6075983..6085288)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene short spindle 6 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene logjam

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article
  2. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article
  3. A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. Neely GG, et al. Cell, 2010 Apr 2. PMID 20371351, Free PMC Article
  4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
  5. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein
Names
CG13293-PB
CG13293-PC
CG13293-PD
CG13293-PE

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    6082883..6092188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001274534.2 → NP_001261463.1  uncharacterized protein Dmel_CG13293, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261463.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PEA7
    Conserved Domains (1) summary
    pfam12070
    Location:20 → 546
    SCAI; Protein SCAI

  2. NM_139767.2 → NP_648024.2  uncharacterized protein Dmel_CG13293, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648024.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VRT9
    Conserved Domains (1) summary
    pfam12070
    Location:20 → 551
    SCAI; Protein SCAI

  3. NM_001274535.1 → NP_001261464.1  uncharacterized protein Dmel_CG13293, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261464.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PER3
    Conserved Domains (1) summary
    pfam12070
    Location:20 → 551
    SCAI; Protein SCAI

  4. NM_001274536.1 → NP_001261465.1  uncharacterized protein Dmel_CG13293, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261465.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VRT9
    Conserved Domains (1) summary
    pfam12070
    Location:20 → 551
    SCAI; Protein SCAI
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PEA7 M9PEA7
M9PER3 M9PER3
Q9VRT9 Q9VRT9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous