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CG6610 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38693, updated on 4-Jan-2025

Summary

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Official Symbol
CG6610provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0035675
Locus tag
Dmel_CG6610
See related
AllianceGenome:FB:FBgn0035675
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RE60135; Dmel\CG6610
Summary
Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of Lsm1-7-Pat1 complex; spliceosomal complex; and spliceosomal snRNP complex. Is expressed in organism. Orthologous to human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG6610 in Genome Data Viewer
Location:
65A5-65A5; 3-16 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (6075536..6076258)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (6068636..6069358)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene short spindle 6 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster. Holloway AK, et al. Genome Res, 2008 Oct. PMID 18583644, Free PMC Article
  2. Pre-messenger RNA processing factors in the Drosophila genome. Mount SM, et al. J Cell Biol, 2000 Jul 24. PMID 10908584, Free PMC Article
  3. The genetic architecture of odor-guided behavior in Drosophila melanogaster. Anholt RR, et al. Behav Genet, 2001 Jan. PMID 11529271
  4. spenito is required for sex determination in Drosophila melanogaster. Yan D, et al. Proc Natl Acad Sci U S A, 2015 Sep 15. PMID 26324914, Free PMC Article
  5. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs. Li H, et al. DNA Res, 2016 Dec. PMID 27559081, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
contributes_to RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
contributes_to RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mRNA splicing, via spliceosome ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U4/U6 x U5 tri-snRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U6 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of spliceosomal complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
Names
CG6610-PA
CG6610-PB
CG6610-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    6075536..6076258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_139765.4 → NP_648022.1  uncharacterized protein Dmel_CG6610, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648022.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VRT7
    Related
    FBpp0076756
    Conserved Domains (1) summary
    cd01732
    Location:12 → 87
    LSm5; Like-Sm protein 5

  2. NM_001274533.1 → NP_001261462.1  uncharacterized protein Dmel_CG6610, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261462.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VRT7
    Conserved Domains (1) summary
    cd01732
    Location:12 → 87
    LSm5; Like-Sm protein 5

  3. NM_001274532.1 → NP_001261461.1  uncharacterized protein Dmel_CG6610, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261461.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VRT7
    Conserved Domains (1) summary
    cd01732
    Location:12 → 87
    LSm5; Like-Sm protein 5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VRT7 Q9VRT7

Gene LinkOut

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