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CG13894 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38086, updated on 4-Jan-2025

Summary

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Official Symbol
CG13894provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0035157
Locus tag
Dmel_CG13894
See related
AllianceGenome:FB:FBgn0035157
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
dmCG13894; Dmel\CG13894
Summary
Is expressed in several structures, including amnioserosa primordium; anlage in statu nascendi; cuboidal/columnar epithelium; ganglia; and head epidermis primordium. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

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See CG13894 in Genome Data Viewer
Location:
61C8-61C8; 3-0.5 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (693083..699144, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (693083..699144, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene RabX6 Neighboring gene Vesicle transport through interaction with t-SNAREs 1a Neighboring gene long non-coding RNA:CR44514 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element. Quesneville H, et al. Mol Biol Evol, 2005 Mar. PMID 15574804
  2. A gain-of-function screen identifies wdb and lkb1 as lifespan-extending genes in Drosophila. Funakoshi M, et al. Biochem Biophys Res Commun, 2011 Feb 25. PMID 21281604
  3. The THAP domain: a novel protein motif with similarity to the DNA-binding domain of P element transposase. Roussigne M, et al. Trends Biochem Sci, 2003 Feb. PMID 12575992
  4. Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo. Haines JE, et al. PLoS Genet, 2018 May. PMID 29727464, Free PMC Article
  5. Sox21b underlies the rapid diversification of a novel male genital structure between Drosophila species. Ridgway AM, et al. Curr Biol, 2024 Mar 11. PMID 38309269

See all (32) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG13894-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    693083..699144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_138210.2 → NP_612054.1  uncharacterized protein Dmel_CG13894 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_612054.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MQY8, Q9W0N5
    Related
    FBpp0072502
    Conserved Domains (3) summary
    smart00674
    Location:104 → 165
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    smart00980
    Location:6 → 82
    THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
    pfam13945
    Location:382 → 468
    NST1; Salt tolerance down-regulator
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8MQY8 Q8MQY8
Q9W0N5 Q9W0N5

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