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serbp1.S SERPINE1 mRNA binding protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379987, updated on 4-Jan-2025

Summary

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Official Symbol
serbp1.S
Official Full Name
SERPINE1 mRNA binding protein 1 S homeolog
Primary source
Xenbase:XB-GENE-866335
Locus tag
XELAEV_18025105mg
See related
EnsemblRapid:ENSXLAG00005012867 AllianceGenome:Xenbase:XB-GENE-866335
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cgi-55; chd3ip; habp4l; rda288; serbp1; pairbp1; pai-rbp1
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within regulation of translation. Is expressed in endoderm; liver and biliary system; and respiratory system. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See serbp1.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (64298098..64313083)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (58125260..58140263)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), gamma 12 S homeolog Neighboring gene growth arrest and DNA damage inducible alpha S homeolog Neighboring gene interleukin-12 receptor subunit beta-2 Neighboring gene interleukin 23 receptor S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53445

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of translation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SERPINE1 mRNA binding protein 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086826.1 → NP_001080295.1  SERPINE1 mRNA binding protein 1 S homeolog

    See identical proteins and their annotated locations for NP_001080295.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046574
    UniProtKB/TrEMBL
    A0A974HM18, Q7ZWZ2
    Related
    ENSXLAP00005037908.1, ENSXLAT00005038819.1
    Conserved Domains (2) summary
    pfam04774
    Location:191 → 297
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:5 → 95
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    64298098..64313083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259394.2 → XP_018114883.1  SERPINE1 mRNA binding protein 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0V466
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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